Submitting your alignment in SAF format

Bold face: keyword "# SAF"

• The string "# SAF" is crucial, as the parser interprets anything after this line as an alignment in SAF format.
• The '#' is a control for PredictProtein. The actual SAF-format begins after that line!
• Names should contain up to 14 characters and no blanks.
• Please use the same names for the same protein in all rows.
• To mark insertions, please use a point '.'.

Example

Joe Sequencer
joe@amino.churn.edu
# SAF   incredulase from paracoccus dementiae, translated from cDNA
***** don't type this line (is a comment): The hash ('#') is a control for PredictProtein.
***** don't type this line (is a comment): The actual SAF format starts in the next line.
t2_11751 EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_1   EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_2   ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
name_22  ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
#     this may be a comment from you (for your memo or easy editing),
#     any line (after the first '# SAF format') beginning with a hash '#' will be ignored.
t2_11751 GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_1   GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV