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Tools for post-processing PredictProtein results PredictProtein usually displays alignments and predictions in a very simple ASCII format. You can obtain some more 'fancy' alignment views using one (or many) of the following methods for post-processing the results you obtained from PP.
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| ACTION |
HTML version of results |
| Tool |
PredictProtein |
| Description |
The display of PredictProtein in HTML (viewable for your WWW browser, e.g. Netscape) is an option you can select when submitting your request. At this point, we do NOT offer a conversion of PP results to HTML, rather we suggest you resubmit your request with the appropriate choices.
Note: PP results in HTML can become very large, you may want to check the box 'Results on FTP site, NOT in email' to not let your email overflow. |
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| ACTION |
Postscript, TIF, or GIF images of results |
| Tool |
ESPript |
| Authors |
Patrice Gouet and Emmanuel Courcelle |
| Please quote |
P Gouet, E Courcelle, D I Stuart & F Metoz: ESPript: multiple sequence alignments in PostScript. Bioinformatics, 15, 305-308, 1999. |
| Description |
ESPript converts the PredictProtein results (and other alignments) into fancy images.
To use the tool, you have to do the following:
- Save the PredictProtein results into a file.
- Load ESPript (see below)
- Provide the file in which you saved the results in the appropriate boxes of ESPript (click 'Browse ..' boxes in upper half)
- Run ESPript (click 'Run ESPript' button on lower left corner)
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| Go to ESPript |
local mirror in New York: http://rostlab.org/cgi/pp/ESPript.cgi
original ESPript site in Toulouse: http://prodes.toulouse.inra.fr/ESPript |
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