Example for output from SEG

Sequence: paho_chick (SWISS-PROT)

SEG output appended by default

OUTPUT

Note: comments marked by "## COMMENT: "

Quick guide through output

• the sequence you sent
• SEG motifs

The following information has been received by the server:

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

________________________________________________________________________________

return concise
phdacc
test seq from phd people
run prodom
#1ppt.pir ( 1ppt.hssp from:    1 to:   36 )
MPPRWASLLL LACSLLLLAV PPGTAGPSQP TYPGDDAPVE DLIRFYNDLQ
QYLNVVTRHR YGRRSSSRVL CEEPMGAAGC

________________________________________________________________________________

Result of SEG low-complexity search (JC Wootton & S Federhen):
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

please quote: J C Wootton & S Federhen:  Analysis of compositionally
biased regions in sequence databases.  Meth. in Enzymol.
1996, 266, 554-571.                                     

NOTE 1:       regions of low-complexity ('simple sequence' or 'compo-
                    sition biased regions') are marked by the letter 'x' in
                    the following output.
NOTE 2:       The dynamic programming algorithm (MaxHom) does NOT take
                    the SEG information into account, nor do the PHD pre-
dictions!
                                        
!!! --> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! <--  !!!
!!! --> WE STRONGLY suggest that you resubmit the regions NOT marked by <--  !!!
!!! -->             'x' separately!!                                    <--  !!!
!!! --> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! <--  !!!
                        
________________________________________________________________________________


>prot ,  (#) ppOld,1ppt.pir ( 1ppt.hssp from:    1 to:   36 ) t1
MPPRWxxxxxxxxxxxxxxVPPGTAGPSQPTYPGDDAPVEDLIRFYNDLQQYLNVVTRHR
YGRRSSSRVLCEEPMGAAGC