PHD predictions for fragment of prio_human
Different levels of data:
- PHD brief
- PHD normal
- PHD detail
- PHDsec summary
overall your protein can be classified as:
mixed
given the following classes:
- 'all-alpha': %H > 45% AND %E < 5%
- 'all-beta': %H < 5% AND %E > 45%
- 'alpha-beta': %H > 30% AND %E > 20%
- 'mixed': all others
- Predicted secondary structure composition for your protein:
- Residue composition for your protein:
| %A: 5.0 | %C: 1.7 | %D: 2.8 | %E: 1.7 | %F: 1.7 |
| %G: 23.3 | %H: 5.0 | %I: 1.1 | %K: 3.9 | %L: 3.9 |
| %M: 4.4 | %N: 5.6 | %P: 8.3 | %Q: 5.6 | %R: 4.4 |
| %S: 5.0 | %T: 2.2 | %V: 3.9 | %W: 5.0 | %Y: 5.6 |
| AA : | amino acid sequence |
| PHD_sec: | PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop)
PHD = PHD: Profile network prediction HeiDelberg |
| Rel_sec: | reliability index for PHDsec prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*' |
| SUB_sec: | subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header)
NOTE: for this subset the following symbols are used:
L: is loop (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 5 |
| | | |
| pH_sec: | 'probability' for assigning helix (1=high, 0=low) |
| pE_sec: | 'probability' for assigning strand (1=high, 0=low) |
| pL_sec: | 'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| P_3_acc: | PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%. |
| Rel_acc: | reliability index for PHDacc prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*' |
| SUB_acc: | subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header)
NOTE: for this subset the following symbols are used:
I: is intermediate (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 4 |
| | | |
| PHD_acc: | PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%). |
PHD results (brief)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18
AA MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
PHD_sec EEEEEEEEEEEEE EEEEE EE E
Rel_sec ** ******** **************************************** ****** ****** *** **** ****************** * **** *** ****** ****** ** **** ****** * *
P_3_acc bbebbbbbbbbbbbbbeeebeeeeeeeeebeeebbee ebeb ebbeeeeeeebbbeb bebbbeb eebbbeb bebbbeb eeb bebebbbeeeeeeeeeeeeeeeeebebbbebbbebbbebbeeebeeeeeee eebeeeeeeeeeeebeebeeeeeb ebeeeeeee bbbbbb
Rel_acc * * ***** ** **
PHD results (normal)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18
AA MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
PHD_sec EEEEEEEEEEEEE EEEEE EE E
Rel_sec 971014899999974215788888888887677886558887667777677676655455566533336786553246753223578631334341368988886556576766522454655544433565479887544688987311356333688533430444798986351149
SUB_sec LL....EEEEEEEE...LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL.LLLLLL....LLLLLL...LLL....LLLL.........LLLLLLLLLLLLLLLLLL...L.LLLL.....LLL.LLLLLL..LLLLLL....LL...LLLL........LLLLLL.E...L
P_3_acc bbebbbbbbbbbbbbbeeebeeeeeeeeebeeebbee ebeb ebbeeeeeeebbbeb bebbbeb eebbbeb bebbbeb eeb bebebbbeeeeeeeeeeeeeeeeebebbbebbbebbbebbeeebeeeeeee eebeeeeeeeeeeebeebeeeeeb ebeeeeeee bbbbbb
Rel_acc 211534367454321100010001001100100000101111000001000001010200120102000101030001001100010002010100001011110000001002010110111101100010000110000111001100110001000000110001010100461164
SUB_acc ...b.b.bbbbb..................................................................................................................................................................bb..bb
PHD results (detail)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18
AA MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
pH_sec 1.0 pH_sec
pH_sec 0.9 pH_sec
pH_sec 0.8 pH_sec
pH_sec 0.7 pH_sec
pH_sec 0.6 pH_sec
pH_sec . . . . 0.5 pH_sec
pH_sec . .... ... .... ......... ... ... 0.4 pH_sec
pH_sec . .. . ............... ...... ...... .......... ..... ...... ........ .. . 0.3 pH_sec
pH_sec .... . .. .... .... ......................................................... . ............................... ... . . ... 0.2 pH_sec
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pE_sec ..... 1.0 pE_sec
pE_sec ........ 0.9 pE_sec
pE_sec ........ . 0.8 pE_sec
pE_sec .......... ... .. 0.7 pE_sec
pE_sec ........... .... .. . 0.6 pE_sec
pE_sec .............. . ..... .... 0.5 pE_sec
pE_sec ............... .... .. ....... .... 0.4 pE_sec
pE_sec ................ .. ..... .... ......... ..... 0.3 pE_sec
pE_sec .................. . .. .. ..... ....................... ...... 0.2 pE_sec
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pL_sec . . 1.0 pL_sec
pL_sec . ........... .. ... . . .. .. ...... .... ..... .. ..... . 0.9 pL_sec
pL_sec .. ...................................... ... ..... ... .... ................. . . . ..... ...... . .... ...... . 0.8 pL_sec
pL_sec .. ............................................... ......... ..... ..... .... .................. .......... .................. .. ..... ......... .. 0.7 pL_sec
pL_sec .. .................................................................................................................................... .......... ......... .. 0.6 pL_sec
pL_sec .... ................................................................................................................................................ .......... .... 0.5 pL_sec
pL_sec ..... ................................................................................................................................................................. .... 0.4 pL_sec
pL_sec ...... ...................................................................................................................................................................... 0.3 pL_sec
pL_sec ....... ....................................................................................................................................................................... 0.2 pL_sec
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P_3_acc bbebbbbbbbbbbbbbeeebeeeeeeeeebeeebbee ebeb ebbeeeeeeebbbeb bebbbeb eebbbeb bebbbeb eeb bebebbbeeeeeeeeeeeeeeeeebebbbebbbebbbebbeeebeeeeeee eebeeeeeeeeeeebeebeeeeeb ebeeeeeee bbbbbb
PHD_acc 100% PHD_acc
PHD_acc 81% PHD_acc
PHD_acc . . ... .... . . . ... .. ....... ... . . . .... . . .. .. .. .. ... ... 64% PHD_acc
PHD_acc . ... ......... ... .. . . . ....... . . . .. . . . .. . . ................. . . . . ... ....... .. ........... .. ..... . ....... 49% PHD_acc
PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... . ....... 36% PHD_acc
PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 25% PHD_acc
PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 16% PHD_acc
PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 9% PHD_acc
PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 4% PHD_acc
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