# "short" alignment format (showing only aligned regions)
# P-value, E-value : statistical significance of "bi-directional" scores (caution: too optimistic for highly significant values)
# P-frwd, E-frwd   : statistical significance of "forward" scores (generalized profile of a query against a database of generalized sequences)
# P-frwd, E-frwd   : statistical significance of "reversed" scores (generalized sequence of a query against a database of generalized profiles)
# query sequence   :
# MRRLNRKNNEALKKLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK
# KLEYLGYIYQPHTSAGRIPTDKGLRFYYEEMLKISKETSEADLAVETFKSMPLADPEKVL
# FLAGNLLARLTEGYVLIERPNTRDLKILRVMLIPVSEDYLIFSILTEFGVSKVTPIKTQE
# RLNWEEIERQLNFLLRGRTVGEVLMGKIESLKGSGFLRLIESLIGETVERYLDAGLENLL
# KDETLTLEDIRNLLEEVKDQKFLESLVGEGITVRIGREIGRKKLEKFAVFSGKYFKGESP
# IGSVYLFTSKVTKYDRNHRVFEYILNRLSEYFTSTSRR
#
>1jhf_A P-value=4.572e-08 E-value=1.173e-04 (P-frwd=1.084e-04 E-frwd=2.780e-01 P-rvsd=2.014e-05 E-rvsd=5.169e-02)
Query: 13   KKLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72   
Sbjct: 1    KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFR-SPNAAEEHLKALARKGVIEIVS 59   

Query: 73   TSAGRIPTDKGLRFYYEEMLKISK-------ETSEADLAVETFKSMPLADPEKVLFLAGN 125  
Sbjct: 60   GASRGIRLLQEEEEGLPLVGRVAADEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSM 119  

Query: 126  LLARLTEGYVLIERPNTRDLKILRVMLIPVSEDYLIFSILTEFGVSKVTP 175  
Sbjct: 120  KDIGIMDGDLLAVHK-TQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLP 168  

>1bia P-value=2.183e-05 E-value=5.602e-02 (P-frwd=1.359e-03 E-frwd=3.485e+00 P-rvsd=1.116e-03 E-rvsd=2.863e+00)
Query: 14   KLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73   
Sbjct: 2    KDNTVPLKLI-----ALLANGEFHSGEQLGETLGM--SRAAINKHIQTLRDWGVDVFTVP 54   

Query: 74   SAG----RIPTDKGLRFYYEEMLK--------ISKETSEADLAVETFK------------ 109  
Sbjct: 55   GKGYSLPEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQA 114  

Query: 109  ----------------SMPLADPEKVLFLA---GNLLARLTEGYVLIERPN---TRDLKI 147  
Sbjct: 115  GSPFGANLYLSMFWRLEQPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKL 174  

Query: 148  LRVMLIPVSEDYLIFSILTEFGVSKVTPIKTQERLNWEE-IERQLNFLLRGRTVGEVLMG 206  
Sbjct: 175  AGILVELTGAAQIVIGAGINMAMW-ITLQEAGINLDRNTLAAMLIREL-------RAALE 226  

Query: 207  KIESLKGSGFLRLIESL 223  
Sbjct: 227  LFEQEGLAPYLSRWEKL 243  

>1mzb_A P-value=3.129e-05 E-value=8.029e-02 (P-frwd=8.533e-03 E-frwd=2.189e+01 P-rvsd=2.617e-04 E-rvsd=6.716e-01)
Query: 8    NNEALKKLNDRQRKVLYCIVREYIENKKPVSSQ---RVLEVSNIEFSSATIRNDMKKLEY 64   
Sbjct: 3    ENSELRKAGLKVTLPRVKILQMLDSAQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 62   

Query: 65   LGYIYQPHTSAGR 77   
Sbjct: 63   AGLVVRHNFDGGH 75   

>1f9n_B P-value=2.626e-04 E-value=6.738e-01 (P-frwd=1.803e-02 E-frwd=4.625e+01 P-rvsd=1.244e-03 E-rvsd=3.193e+00)
Query: 14   KLNDRQRKVLYCIVREYIENKKPVSSQRV---LEVSNIEFSSATIRNDMKKLE------Y 64   
Sbjct: 2    NKGQRHIK-----IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTN 56   

Query: 65   LGYIYQPHTSAGRIPTDKGLRFYYEEMLKISKETSEADLAVETFKSMPLADPEKVLFLAG 124  
Sbjct: 57   NGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIV----LKTMPGN-----AQAIG 107  

Query: 125  NLLARLTEGYVLIERPNTRDLKIL 148  
Sbjct: 108  ALMDNLDWDEMMGTICGDDTILII 131  

>1q1h_A P-value=2.635e-04 E-value=6.761e-01 (P-frwd=8.120e-03 E-frwd=2.083e+01 P-rvsd=2.773e-03 E-rvsd=7.116e+00)
Query: 6    RKNNEALKKLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65   
Sbjct: 3    NAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNI--KVNDVRKKLNLLEEQ 60   

Query: 66   GYIYQPHTSAGR 77   
Sbjct: 61   GFVSYRKTRSGW 72