Example for submitting your alignment in SAF format

Specification of compulsary features of SAF.

• Names should contain up to 14 characters and no blanks.
• Please use the same names for the same protein in all rows.
• All sequences must have the same length.
• To mark insertions, please use a dot '.'.

The following are valid SAF alignments.

Example 1

t2_11751 EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_1   EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_2   ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
name_22  ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.

t2_11751 GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_1   GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV

Example 2

                    10         20         30         40         
t2_11751 EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_1   EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_2   ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
name_22  ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
         50         60         70         80         90
t2_11751 GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_22  .......... .......... .......... ........
name_1   GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_2   .......... NVAGGAPTLP